I wouldn't be too worried about the pin bore area of the piston until you have the bore measured to see what the clearance is set to as is. A full floating pin once pin fitted will glide/slide with no press fit. Thats the point of being a full floating pin design. Forged pistons will never have a press fit pin design its old technology and floating is a far superior foot print for pin bore design. Stock cast pisons only have a few tenths clearance on the pin bore as its a press fit application. Even at operating temps the expansion isn't enough to make any real noticable difference and is still considered and retained as a press pin applicant.
As for the offset pin bore housing that is pretty shitty situation..however, the rod small end is not the entire width between the pin bore housing areas. Regardless of what you or your engine builder may think the rod small end is going to move a little side to side when in a dynamic condition. If you measure total width of the small end compared to the overall space between both pin bore housings you'll notice that the rod still will have plenty of area but this does not negate the fact that the pistons were machine improperly.
Guess its time for you to get another set of pistons.