Hesitation is only under load. So it can be 1/4 throttle or full throttle and it still does it. If your cruising and holding it at say 3k rpm it will cruise fine until you try to accelerate. If you put in the clutch it rev's up freely, turn the car off and back on. The hesitation is gone for a minute or so. It is stock efi. I will check into the ignition module as I was thinking the same thing, just haven't had the time to check it yet. No vacuum leaks, new afm boot, freshly cleaned fuel injectors, fresh fuel pump, fresh fuel filter etc.
Thanks for the suggestions. I am going check the fuel pressure this week too just to narrow things down. But I really have a feeling its ignition related.