Ah man I know the pain. Are you planning to work on the upper rails that run along the engine bay (I think they are called horns? correct me if I'm wrong)? The corner where the driver side fire wall meets the shock tower support sheet and the sheet of metal that connects the door hinges was completely rusted out for me. PO did some botched work that you guessed it made the rust worse. Then the car sat on the side of the road in Chicago 👌. I didn't go as far as you did for the piece that you just took off. (I just POR-15 and let the paint spill towards the bottom). You are doing the better route. Keep it up.
I didn't like how Nissan didn't include a weep hole (at least I didn't see one and no, open seem welds don't count as weep holes!). They did for the front where your hood hinges bolt on to. This made is so that the water would just go down the horns and into the seams where it meats the column that supports the door hinges and then straight down into the inner and outer rocker! Water also came In through the top and along the seam where the weather strip is supposed to be. So much for that 😕