Turned out the megasquirt processor "died". It won't even accept any sort of boot code. Hooked up to a scope and saw that the signal was making it to the processor, but nothing came back to the computer. Also blew the opti coupler.. I don't understand how it happened, there are fuses.. and diodes to act as failsafes in that case.. but they didn't do their job apparently.
I am receiving a new unit tomorrow morning, overnighted from new york from another member. I swear to god, if I can't load my tune, plug that ***** in and drive off the exhaust parking lot with my brand new 3 inch exhaust, I will torch the car.