In order to retain the fan clutch and shroud and keep the piping short, I would have the outlets rewelded to go straight up, and turn the intercooler sideways. It will be hard to run a cold air intake, you might have to run it under the car or point it at a 45 degree angle towards the ground.
If you want to run the intercooler up and down, I would add a 90 degree turn to the passenger side outlet and the drivers side outlet, but then you would have to center it since you probably dont have alot of room to offset it much to the drivers side of the radiator support.
If you want to run the intercooler piping through the passenger side, I would add a 90 degree bend on passenger side outlet towards pass side, move the intercooler forward and leave the other side. If you want to keep fan clutch and shroud you have to route the pipe low, and the x member sway bar or something else usually gets in the way there, and to run it low you have to run a lot of bends and a really long pipe, not the best flowing setup.