Did the supplier tell you exactly how to connect the new harness to your existing harness(es) wiring? Megasquirt in an S30 is never "Plug and Play".
The wiring to the GM coils and/or number of wires used has nothing to do with the CAS wiring. The CAS supplies a "tach" input to the ECU - it just supplies the ECU with the engine speed. BUT, until the ECU "knows" the engine is indeed turning, it can't do anything - so the CAS input is critical. This signal is displayed in you tuner studio gauges EVEN IF the engine is not running. When the engine is cranking, IF the turner studio gauge RPM is showing engine rotation, THEN it IS receiving the CAS signal or "tach input". That's where that virtual gauge gets it's information - from the CAS.
The GM coils do need power at ignition on. Normally it's supplied through an EFI relay. Using Tuner Studio, you can test each coil for proper operation (and sequence) BEFORE you start the engine. It's part of the recommended start-up procedure which is in the "Setting Up" manual. I understand that you've already seen this setup work on the demo engine - but, that was on the demo engine not yours... I'm more interested in HOW you connected the supplied harness to your 280Z.