I just measured them with the indicator, the drivers rotor is perfect on both sides (*<.001 runout), the passenger side is out .004 on the outside and .001 on the inside. So it's not as bad as I thought.
I just rotated the tires, the rears were pretty bad, fronts were in good shape. Maybe I should replace the bad pair and have them balanced on a fancy road force machine.
Edit: these pads also squeal, BAD, but just about every pad I've had on this car has, from cheap organic to the porterfields.