you can do anything you want
I would fix all the shorts in the system you have now, find the sources, you really dont want to swap fuse boxes and keep blowing new fuses right?
I replaced almost every white/red wire with a larger guage high quality monster cable wire, and fixed almost every other connection on the car, cleaned every connector from the switches, guages, hazard lights, brakes, and what not. ALso changed out a lot of sockets on the car with zx and later sockets, cleanest ones I could find in the Jy. My car had a real gremlin problem at one point, and I decided enough was enough and just went apesh1t with the wiring. I got another stock fuse box, cleaned it and improved the soldering on the back of it, had no issues with it, and didnt have to change any of the connections to any of it.
I do still run the ugly fusible links, I am going to run monster cable inline fuses for it sooner or later.
Nobody knows until now, but Im a Monster Cable vendor, and I use only Monster Cable on most of the stuff on my car electrical, except for my ghetto stereo system....