Since you are running an auto, you have more flexibility in positioning the motor. With a straight drive, you got to get the shifter near the shifter opening in the console to avoid a major hack job. You might be able to use the mounts like you describe, I just don't think anyone has done that and posted about it. The JTR setup works really well with blockhuggers, and is usable with the S&S's, but they are pretty low. I used to think the blockhuggers cost some power, but Mark's yellow LT1 car makes way, way past 500hp with them, so they're not that bad. About the only dis to the JTR setup is reworking the hood latch, but JTR makes some nice pieces to deal with that.
One thing for sure, you need to get the engine position and headers worked out before you make the drivehaft, or you will spend unecessary $$$$ changing the drive shaft.
jt