For starters, it sounds as though your reaction disk has fallen out of position in the brake booster. Search here for reaction disk repair...it's an easy fix, if that's what's happened.
Next, did you go with a bigger MC when you installed the rear discs? I think most people choose a 1" MC when doing rear disc conversion....that might possibly be the cause of weak rear pressure. (You may also find that you need an adjustable rear proportioning valve, once the swap is completed.)
Finally, if you still have the stock tee connector for the rear brake hard lines in the system, I would bleed the left rear first...then right rear. The stock tee connector is on the passenger side of the car, which actually results in the left rear having the longest run of brake line of the four wheels.
Good luck with it.