A Gurney flap creates suction on its rear side. The flow doesn't have to be perfect, and you aren't getting laminar flow anywhere on a car. Look at basically any racecar with a radiator ducted to the hood. There's a Gurney flap to increase the suction in its wake.
Flow isn't binary. It isn't clean or dirty, and pressure isn't just high or low. There's varying degrees to all of it. The smoke in the Ecoboost picture you posted is still flowing through that area, even if it's a little messy. The more you vent out the top and rear of the wheel well, the cleaner the flow will be alongside it because there won't be as much spill. He's done a pretty good job of that on the car in the video, so the flow by his wheels is likely even better than the aforementioned Ecoboost picture.