Man, it's been a while. I re-read this thread and see some opportunity to get to the bottom of this issue, which strangely, has not gone away despite me ignoring for so long.
- I rewired my ignition so I am using the factory L28ET coil and ignitor, and just using the MS output to trigger it, keeping the coil current out of the MS box. Although the ignition signal is quieter, I still have the periodic miss.
-I pulled my distributor and ensured the DIY wheel and sensor were functioning as designed, with a 1k resistor pullup to the battery voltage. I spun it with a drill and watched the signal on my eBay oscilloscope - perfect.
- Last night I hooked my scope up to the PCB of my MSIII, tach in and the VR output. Interestingly, it ran like a whole bunch of crap with the scope probe on the VR output (the distributor signal still looked good), improved back to normal periodic miss when I took the probe off.
- Then I re-wired the tach input through the optical input and looked at the output. I got better and cleaner signal out to the MSIII, so I will keep it that way, but it still has the periodic miss. One thing I see now that I did not before, is this periodic miss is not caused by the tach input. Whatever is upsetting the MS, it is not the tach signal, which is very clean and not upset when the miss happens. I see the tach signal widen (slow down) during a miss, but the signal is not disturbed, so I need to look elsewhere.
So now, reviewing the suggestions, I think I will try the cap on the H1 boot. Perhaps the noise level in general is causing a reboot. But maybe before that, I can try moving where my Megasquirt ground is bonded. Currently it is connected to the starter bolt, the same place as the battery ground. I can't see how connecting that to the body would be an improvement, but at least if it makes the problem worse or better I will know I'm on the right track.
And Matt, I will see if I can capture a data log during this miss. As with all software, I do not often explore the details or understand the options, but I will see if I can capture anything of note.